Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015940653.1_cds_XP_016484788.1_75769
CDS Infomation

[gene=LOC107805296] [db_xref=GeneID:107805296] [protein=putative late blight resistance protein homolog R1B-16] [protein_id=XP_016484788.1] [location=complement(join(38634..40284,41637..41746))] [gbkey=CDS]
Sequence

ATGCCCGAAGGACGAGGAAGACATTTCAAAAGCTGCAGAGAGAGATTGAAGGCTTTCGAG
TATAAAAGGGAGCAGATCAAACTCTGTAGTTACTTTTGCAGATATGAAAGATCTCTGAAG
GTACGTCCCAGAGTAGCAAGAGAGATGGCTGCTTATGCTGCTGTAACTTCTCTGTTGGGA
ACAATACACCTGATTTCACAATCCAGCTTAAAGCTTCAAGAGGGTCACAAAGAGCATTTG
AGATTACTCTACAAGAAGGTTAGATCTTTGCAAGAGCTTCTTGACAATAGTGATGATGAA
CCAACAAAGGATTTGCAAGAAAAAGTAAAAGATTTAGCACAAGAAGTAGAAGACAAAGTT
GAGTCGCGCATTCAAAGAGAGGCCCAGAAGACGCTTCTTAAAATGTTGCAACGAGTCTTC
AACCTTCCAACAAAGGCCCATGGGAGGCTTCTTAAGATCATGCAACAAGCTATAAAAGAC
ATTGATTCTGTTAAGGAGTGGTTCATCAAGCAGCGGGAAAATAATATTTCAGCTGGTGCT
TCCAGTTCAGCACAATATCATGTTTCAACCATCGAAAATGATATGGTGGGGTACAACATT
GAACAAGAGCTCATGCGGGATCAACTTAGGGGACACTCGTCTCAACTGGAAGTCATCTCC
ATTGTTGGTATGGGTGGCATAGGTAAGTCAACTTTTGCCAAAAAGATGTTTTCTGATCCC
TCAATTATGAGCTTTTTTGATGTTCGAGGATGGATTACTGTGTCCAAGGACTACAGTTTA
AGAAGGATACTTCTAGGCCTCCTTCAAGATGCTATTGGGGTGAAAGAAATGCTTGATAAG
GTAAGCGATGATGCACTTGCAGATCGCTTGCAGAAAAGCTTAAAGGGTAGGAGGTATTTG
ATTGTTGTGGATGACATATGGAGCAGGGAAGCCTGGGATGGGATTAGACTATGCTTTCCA
GAATATAGTAATAAAAGTAGGATATTGTTGACTACTCGAGACATGAAGGTTGCTCAGTAT
GCTAGCTTTCCTAAGGATCCTTTTCCAATGCGTTTCCTGGAGCTAGAGGAAAGTTGGAAT
TTGTTTTGCCAAAAGGCGTTTGACCAAAAAGTCTGTCCGATTGGATTTGAAGATGTCGCA
AAGGAAGTTGTGGAAAATTGCAAAGGATTACCACTAATGATTTCTGTGGTTGCAGGGACT
CTCTCTAGCAAGAGGACACTGGACGAGTGGTGGAAAGTAGCTCAAAGCGTCAGCTCATTA
GTAAACCTTGATGATTATCAACGTTGCTCAGGAGTGCTTTCTTTGAGCTACAATCATCTT
CTGTCTCATTTGAGAGCTTGTTTTCTGTATTTTGGAGTTTTCCCAAAAGCTAGTGAGATT
TCTGTGAAGAAGTTGATTAGATTATGGGTTGCAGAAGGATTCTTAGAGCTGAAGGGGCTT
GAGGGATTGGAAAAAGTAGCTGCTAATCTGTTACATGATCTTATTGATAAAAGTCTAGTT
GTTGTTAGCAAGCAGAGTTTGGCTGGCAAAATCAAGACATGCAGGATTCATGATCTTCTC
CATGATTTATGCTTGAGAGAAGCTGAAAGCGAGAATCTCTTGTACATGGCAAATCCAGTT
ACTTATGAAGGACCCAGAAGGGTTTCCTCTCAAGGTCGTCGGTGGGTGTCAGTTCATCCT
AAGCGAGGTTGTTTTTCTTTCATTTTTTTGATGATCTTACTCACAACAAAACACGTTCTC
TTCATATTTCTTCCAACATAA

Peptide Sequence

PEP ID

XP_016484788.1
PEP Infomation

PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana tabacum]
Sequence

MPEGRGRHFKSCRERLKAFEYKREQIKLCSYFCRYERSLKVRPRVAREMAAYAAVTSLLG
TIHLISQSSLKLQEGHKEHLRLLYKKVRSLQELLDNSDDEPTKDLQEKVKDLAQEVEDKV
ESRIQREAQKTLLKMLQRVFNLPTKAHGRLLKIMQQAIKDIDSVKEWFIKQRENNISAGA
SSSAQYHVSTIENDMVGYNIEQELMRDQLRGHSSQLEVISIVGMGGIGKSTFAKKMFSDP
SIMSFFDVRGWITVSKDYSLRRILLGLLQDAIGVKEMLDKVSDDALADRLQKSLKGRRYL
IVVDDIWSREAWDGIRLCFPEYSNKSRILLTTRDMKVAQYASFPKDPFPMRFLELEESWN
LFCQKAFDQKVCPIGFEDVAKEVVENCKGLPLMISVVAGTLSSKRTLDEWWKVAQSVSSL
VNLDDYQRCSGVLSLSYNHLLSHLRACFLYFGVFPKASEISVKKLIRLWVAEGFLELKGL
EGLEKVAANLLHDLIDKSLVVVSKQSLAGKIKTCRIHDLLHDLCLREAESENLLYMANPV
TYEGPRRVSSQGRRWVSVHPKRGCFSFIFLMILLTTKHVLFIFLPT

Transcript Sequence

Gene sequence data has not been registered.